PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UC4CT
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 654aa    MW: 70703.8 Da    PI: 5.3495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UC4CTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12463508454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Araip.UC4CT 463 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 508
                  799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.2E-5569248IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-15462513No hitNo description
SuperFamilySSF474597.2E-19462527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-19463528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-10463508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-16465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MTDYRSTPTM NLWNDENSSV MEAFMSSSDL SSLWLPPPQS AASTSTSAAP PPPQQQQPPP  60
PPPFNQETLQ HRLQALIEGA RESWTYAIFW QCSYDYSNGL TLLGWGDGYY KGEEDKGKAI  120
KATSFEQQQH RKKVLRELNS LISGPSASGD EAVDEEVTDT EWFFLISMTQ HFVSGTGLPG  180
QAFFNSNPVW VAGPERLLGS GCDRARQGQS FGIQTIVCIP SANGVVELGS TELIYQNPDL  240
MSKVKVLFNF SNSSGDVAGS WPLSSADQGE NDPSSLWLND PSSSAGGIEI RDSVNTAATT  300
TVANNKTVPV VSNPGSSSVV TEAPKNPQQN QGFVLKELNF SSSLKPESGE ILSFGENKKG  360
SYGVNSNNGG NNLFSVQSQS QFVSDENKKR RSPTSRSSIE DGILSFTSGV ILPASNAKSG  420
GGGGGDSDHS DLEASVVKEA VEPEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY  480
ALRAVVPNVS KMDKASLLGD AISYINELKS KLQGLESEKG ELSKQLEDSK KELELASKNS  540
GAAQAAPPPL PAPPDKEQRS RAGVNGKLID LEIEVKIIGW DAMIRIQCSK KNHPAARLMA  600
ALKDLDLEVH HASVSVVNDL MIQQATVNMG SRFYTQEQLM LALSSKVGGG GDAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-75622512195Transcription factor MYC3
4rqw_B1e-75622512195Transcription factor MYC3
4rs9_A1e-75622512195Transcription factor MYC3
4yz6_A1e-75622512195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444452KRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189255.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A151QWJ50.0A0A151QWJ5_CAJCA; Transcription factor MYC2
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29383364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein